Note that if there is a surjection $f:Z\to X$, and $Y\supseteq Z$, then either $X=\emptyset$ or there is a surjection $f:Y\to X$, so the use of partial functions does not give us any advantage (beyond not having to say "or $X$ is empty").
You may want to start by looking at this MO question. What I call the Dual Bernstein-Schroeder theorem (DBS) is the statement that if there are surjections from $A$ to $B$ and vice versa, then there is a bijection between $A$ and $B$. It is open whether this implies choice. As shown at the link, it implies that there are no infinite Dedekind finite sets, but not much more is known.
Your question is whether DBS is a theorem of $\mathsf{ZF}$, and the answer is definitely no. The note by Benjamin Miller mentioned at the MO question (and currently hosted here) gives several counterexamples. These are perhaps not the easiest counterexamples to attain in terms of forcing, but I like them because they involve natural sets that appear in work on descriptive set theory.
Notably:
1. It is provable in $\mathsf{ZF}$ that there is a surjection from $\mathbb R$ onto $\mathbb R\times\omega_1$, and viceversa. Here, $\omega_1$ is the first uncountable ordinal. If these two sets are equipotent, then there is an injection of $\omega_1$ into $\mathbb R$. But this is not provable in $\mathsf{ZF}$. For example, in the Feferman-Lévy model where the reals are a countable union of countable sets, there is no such injection.
To see that there is a surjection, note that the non-terminating decimal expansion of a real $x$ can be seen as coding a binary relation $R$ on the natural numbers: Fix a bijection $\langle\cdot,\cdot\rangle$ between $\mathbb N\times\mathbb N$ and $\mathbb N$, and set $n\mathrel{R} m$ iff the $\langle n,m\rangle$-th digit in the expansion of $x$ is $1$.
Now, use this to define a surjection $f$ from $\mathbb R$ onto $\omega_1$: If this relation $R$ is a well-order of type $\omega+\alpha$, map the real to $\alpha$. Else, map it to $0$.
2. There is an obvious surjection from $\mathbb R$ onto its quotient $\mathbb R/\sim$, where $\sim$ is Vitali's equivalent relation that identifies two reals iff their difference is in $\mathbb Q$. Less trivially, there is also (provably in $\mathsf{ZF}$ a surjection from $\mathbb R/\sim$ onto $\mathbb R$. However, it is not provable that these two sets have the same size. In fact, it is consistent that the quotient is strictly larger. See these nice slides by Mike Oliver on this phenomenon.
For more examples, I refer you to Miller's note. For additional remarks, see here. Definitely, as you suspect, adopting the surjective version of equipotency, leads to much interesting structure becoming invisible. For example, the partial order of cardinalities realized by quotients of $\mathbb R$ can already be quite varied, and all of this variety could just disappear: It is consistent with this great variety that all these quotients are either countable, or at least as large as $\mathbb R$, with the end result that after the identification we only see countable things, and the reals.