Unfortunately I see no way to make sense of this if the base is anything normal. In particular, you will notice that in a standard numeral system, like base 2 or factorial base, the value of each digit will always divide the value of the next:
$$
\newcommand{\div}{\; \mid \;}
1 \div 10 \div 100 \div 1000 \div 10000 \div \cdots
$$
(In base $2$, each power divides the next power of two. In factorial base, each factorial divides the next factorial.
This requirement for a numeral system seems necessary, because you need to be able to "carry" when you are adding numbers. Even negative bases have this property.)
The problem with the series
$1 + 2 + 3 + \cdots$ is that it includes every natural number.
So consider any base, and let $B = 100$, the value of the third digit from the right.
Then there are infinitely many natural numbers that are not multiples of $B$.
Therefore, in the series, you will infinitely often
add a value to the sum which changes the last two digits. Thus, unlike $1 + 2 + 4 + 8 + \cdots$ in base $2$, this sum does not converge digit-wise.
That is, it is not the case that each individual digit is eventually constant in the partial sums.
It's possible there is still some way to justify $1 + \tfrac12 + \tfrac13 + \tfrac14 + \cdots = -\tfrac{1}{12}$, but
the "base" will have to be very unusual indeed. You could try a fractional base. But once you allow fractional or real bases then you have to decide what it means for a number to be represented in this base, how to make that representation unique, how to add numbers in this base, what digits are possible for each individual place in the representation, and so on. In short it becomes a difficult question. I am still thinking about how to define fractional bases (perhaps someone has a reference?) but I think you should think about your question in this regard and find a way to make it more well-posed.