In a comment elsewhere, @Justauser pointed out that, for separably closed fields, your claim follows from the general machinery that algebraic representations carry semisimple (respectively, nilpotent) elements to semisimple (respectively, nilpotent elements). (See Theorem 4.4 of Borel - Linear algebraic groups for the result in the generality in which I have stated it, and Proposition 1.24 of version 2.00 of Milne - Lie algebras, algebraic groups, and Lie groups for the special case of interest here.) $\DeclareMathOperator\ad{ad}\DeclareMathOperator\End{End}$Thus, writing $\ad$ for the algebraic representation $\End_F(F^n) \to \End_F(\End_F(F^n))$ of $\End_F(F^n)$ on itself given by $Y \mapsto (X \mapsto X Y - Y X)$, we have that $\ad(A_\text s)$ is semisimple, $\ad(A_\text n)$ is nilpotent, and (by the Jacobi identity!) they commute, so that $\ad(A) = \ad(A_\text s) + \ad(A_\text n)$ is the Jordan decomposition of $\ad(A)$. In particular, if $\ad(A)$ is semisimple, then $\ad(A_\text n)$ equals $0$, so $A_\text n$ is central in $\End_F(F^n)$; but the centre of $\End_F(F^n)$ consists of the scalar matrices, of which the only nilpotent one is the $0$ matrix. So $A_\text n$ equals $0$, and hence $A = A_\text s$ is semisimple. Over a separably closed field (or, as, for example, @user1551 observed, even just a field that contains all eigenvalues of $A$), this implies that $A$ is diagonalisable.
In general, we seem to be able to conclude only that $A$ is semisimple, not necessarily diagonalisable; but let's dig a bit deeper. We have that the eigenvalues of $\ad(A)$ are the differences of eigenvalues of $A$ (see, for example, @Justauser's answer to What are the eigenvalues and eigenvectors of $\operatorname{ad}_x$ for non-diagonalizable $x$?); so, if $\ad(A)$ is diagonalisable, then every pair of eigenvalues of $A$ differ by an element of $F$. In particular, since $A$ is $F$-rational, so that its eigenvalues are closed under the action of the absolute Galois group of $F$, we have for every eigenvalue $\lambda$ of $A$ and every $\sigma$ in the absolute Galois group of $F$ that $\sigma(\lambda) - \lambda$ belongs to $F$, so that, if $m$ is the order of the restriction of $\sigma$ to the Galois closure of $F[\lambda]$, then $\sum_{i = 0}^{m - 1} \sigma^i\left(\sigma(\lambda) - \lambda\right)$ equals both $\sigma^m(\lambda) - \lambda = 0$ and $m(\sigma(\lambda) - \lambda))$. If $F$ has characteristic $0$, or, more generally, if the Galois closure $E$ of every extension of $F$ of degree at most $n$ satisfies $[E : F] \ne 0$ in $F$, then this implies that $\sigma(\lambda) - \lambda$ is $0$. Since $\sigma$ was an arbitrary element of the Galois group, this implies that $\lambda$ belongs to $F$. Since $\lambda$ was an arbitrary eigenvalue of $A$ (and we already know that $A$ is semisimple), this implies that $A$ is diagonalisable.
If $F$ has characteristic $p > 0$, then $A$ can fail to be diagonalisable. For one family of examples, suppose that $F$ admits a cyclic, Galois extension $E$ of degree divisible by $p$. Fix a generator $\sigma$ of $\operatorname{Gal}(E/F)$. By the additive version of Hilbert's theorem 90 (see, for example, Theorem 6.3 of Lang - Algebra), there is an element $\lambda \in E$ such that $\sigma(\lambda) - \lambda$ is a non-$0$ element of $F$. Then the operator $A$ of multiplication by $\lambda$ on $E$ is an element of $\End_F(E)$ such that $\ad(A)$ is diagonalisable, but $A$ itself is not diagonalisable. For a concrete example of this, you might consider the cubic extension $E$ of $F = \mathbb F_3$ obtained by adjoining a root $\lambda$ of the polynomial $X^3 - X - 1 \in F[X]$, irreducible because it is cubic and has no roots in $F$, with $\sigma$ being the cubing map on $E$. Then, by construction, $\lambda^3 - \lambda$ equals $1 \in F$.