First, we need two preliminary results:
First preliminary result :
$$\ln\left(2 \sinh\left(\frac{x}{2}\right)\right)=\frac{x}{2}-\sum_{k=1}^{\infty}\frac{e^{-kx}}{k} \tag{1}$$
Proof:
$$
\begin{aligned}
\ln\left( \sinh(x)\right)&=\ln\left( \frac{1}{2} \left( e^{x}-e^{-x} \right)\right)\\
&=-\ln 2+\ln\left( e^{x}-e^{-x} \right)\\
&=-\ln 2+\ln\left( \frac{e^{-x}}{e^{-x}} \left( e^{x}-e^{-x} \right)\right)\\
&=-\ln 2+x+\ln\left( 1-e^{-2x} \right)\\
&=-\ln 2+x-\sum_{n=1}^{\infty}\frac{e^{-2nx}}{n} \qquad \blacksquare
\end{aligned}
$$
Letting $x \to \frac{x}{2}$ completes the proof
Second preliminary result:
We have
$$\frac{\operatorname{arcsinh}\left(\frac{x}{2}\right)}{\sqrt{1+\left(\frac{x}{2}\right)^2}}=\sum_{n=1}^\infty \frac{(-1)^{n-1}x^{2n-1}}{\binom{2n}{n}n} \tag{2}$$
Letting $x \to \sqrt{a}x$ we obtain
$$\frac{\sqrt{a}\operatorname{arcsinh}\left(\frac{\sqrt{a} x}{2}\right)}{\sqrt{1+\left(\frac{ \sqrt{a} x}{2}\right)^2}}=\sum_{n=1}^\infty \frac{(-1)^{n-1}a^nx^{2n-1}}{\binom{2n}{n}n} \tag{3}$$
Claim:
$$\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}n^k}=\frac{(-2)^{k-2}}{(k-2)!}\int_0^{2\operatorname{arcsinh}\left(\frac{\sqrt{a} }{2} \right)}x\ln^{k-2}\left(\frac{2}{\sqrt{a}}\sinh\left(\frac{x}{2}\right) \right)\,dx \tag{4}$$
Proof:
$$
\begin{aligned}
\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}n^k}&=\frac{(-1)^{k-1}a^n}{(k-1)!}\sum_{n=1}^\infty\frac{ (-1)^{n-1}}{\binom{2n}{n}}\int_0^1 \ln^{k-1}(x) x^{n-1}\,dx\\
&=\frac{2(-1)^{k-1}}{(k-1)!}\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}}\int_0^1 \ln^{k-1}\left(x^2\right) x^{2n-1}\,dx & \left(x \to x^2\right)\\
&=\frac{2(-2)^{k-1}}{(k-1)!}\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}}\int_0^1 \ln^{k-1}\left(x\right) x^{2n-1}\,dx \\
&=\frac{2(-2)^{k-1}}{(k-1)!}\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}}\left(\frac{x^{2n}\ln^{k-1}(x)}{2n}\Bigg|_0^1-\frac{(k-1)}{2n}\int_0^1 \ln^{k-2}\left(x\right) x^{2n-1}\,dx \right)\\
&=-\frac{(-2)^{k-1}}{(k-2)!}\sum_{n=1}^\infty\frac{ (-1)^{n-1}a^n}{\binom{2n}{n}n}\int_0^1 \ln^{k-2}\left(x\right) x^{2n-1}\,dx \\
&=-\frac{(-2)^{k-1}}{(k-2)!}\int_0^1 \ln^{k-2}\left(x\right)\left(\sum_{n=1}^\infty\frac{(-1)^{n-1} a^n x^{2n-1}}{\binom{2n}{n}n} \right) \,dx \\
&=-\frac{(-2)^{k-1}}{(k-2)!}\int_0^1 \ln^{k-2}\left(x\right)\left(\frac{\sqrt{a} \operatorname{arcsinh}\left(\frac{\sqrt{a} x}{2} \right)}{\sqrt{1+\left( \frac{\sqrt{a} x}{2}\right)^2}} \right) \,dx & \left( \text{by eq. (3)}\right)\\
&=\frac{(-2)^{k-2}a}{(k-2)!}\int_0^{\frac{2}{\sqrt{a}}\operatorname{arcsinh}\left(\frac{\sqrt{a} }{2} \right)} \frac{x\ln^{k-2}\left(\frac{2}{\sqrt{a}}\sinh\left(\frac{\sqrt{a}x}{2}\right)\right) \cosh\left(\frac{\sqrt{a}x}{2} \right)}{\sqrt{1-\sin^2\left( \frac{\sqrt{a}x}{2}\right)}} \,dx & \left( \frac{\sqrt{a}x}{2} \to \sinh\left(\frac{\sqrt{a} x}{2} \right)\right)\\
&=\frac{(-2)^{k-2}}{(k-2)!}\int_0^{2\operatorname{arcsinh}\left(\frac{\sqrt{a} }{2} \right)}x\ln^{k-2}\left(\frac{2}{\sqrt{a}}\sinh\left(\frac{x}{2}\right) \right)\,dx & \left( \sqrt{a}x \to x\right)\\
\end{aligned}
$$
Setting $a=1$ and $k=3$ in $(4)$ we obtain
$$
\begin{aligned}
\sum_{n=1}^\infty\frac{ (-1)^{n-1}}{\binom{2n}{n}n^3}&=-2\int_0^{2\ln(\phi)}x\ln\left(2 \sinh\left( \frac{x}{2}\right) \right)\,dx \\
&=-2\int_0^{2\ln(\phi)}x\left(\frac{x}{2}-\sum_{k=1}^{\infty}\frac{e^{-kx}}{k} \right)\,dx & \left( \text{by eq. (1)}\right)\\
&=-\int_0^{2\ln(\phi)}x^2\,dx+2\sum_{k=1}^{\infty}\frac{1}{k}\int_0^{2\ln(\phi)} xe^{-kx}\,dx\\
&=-\frac{8}{3}\ln^3(\phi)+2\sum_{k=1}^{\infty}\frac{1}{k}\left(-\frac{2\ln(\phi)\phi^{-2k}}{k}+\frac{1}{k}\int_0^{2\ln(\phi)} e^{-kx}\,dx \right)\\
&=-\frac{8}{3}\ln^3(\phi)-4\ln(\phi)\sum_{k=1}^{\infty}\frac{(\phi^{-2})^k}{k^2}+2\sum_{k=1}^{\infty}\frac{1}{k}\left(\frac{1}{k^2}-\frac{(\phi^{-2})^k}{k^2}\right)\\
&=-\frac{8}{3}\ln^3(\phi)-4\ln(\phi)\operatorname{Li}_2(\phi^{-2})+2\zeta(3)-2\sum_{k=1}^{\infty}\frac{(\phi^{-2})^k}{k^3}\\
&=-\frac{8}{3}\ln^3(\phi)-4\ln(\phi)\operatorname{Li}_2(\phi^{-2})-2\operatorname{Li}_3(\phi^{-2})+2\zeta(3)\\
&=-\frac{8}{3}\ln^3(\phi)-4\ln(\phi)\left( \frac{\pi^{2}}{15}-\ln ^{2} \phi\right)-2\left(\frac45\zeta(3)+\frac{2\ln ^{3}(\phi)}{3}-\frac{2\pi^{2} \ln (\phi)}{15} \right)+2\zeta(3)\\
&=-\frac{8}{3}\ln^3(\phi)+4\ln^3(\phi)-\frac{4}{3}\ln^3(\phi)-\frac85\zeta(3)+2\zeta(3)\\
&=\frac25\zeta(3) \qquad \blacksquare
\end{aligned}
$$
Which is the representation of $\zeta(3)$ that Apery used to prove the irrationality of $\zeta(3)$.
Note that we used
$\mathrm{Li}_{2}\left(\frac{1}{\phi^{2}}\right) =\frac{\pi^{2}}{15}-\ln ^{2} \phi$
$\operatorname{Li}_{3}\left(\frac{1}{\phi^{2}}\right)=\frac45\zeta(3)+\frac{2\ln ^{3}(\phi)}{3}-\frac{2\pi^{2} \ln (\phi)}{15}$