Yes, it is consistent. Let me sketch an argument using atoms, then the Jech-Sochor transfer theorem can do its magic (since it's a bounded statement).
Start with a countable set of atoms which is the disjoint union of $A_n$'s each countably infinite. Fix $\leq_n$ on $A_n$ which is a linear order of type $\omega^*+\omega$ (or $\Bbb Z$, in other words).
The automorphism group is $\mathscr G$, of permutations of the atoms which preserve both the partition into the $A_n$'s and their linear orders. In other words, we take a sequence of automorphisms of $\leq_n$ (which are finite shifts), and they each act on the relevant $A_n$. Let us denote a permutation by $\pi$ and $\pi_n$ is the permutation on the $n$-th coordinate.
We define a filter of subgroups in the following way. Given $H$ a subgroup of $\mathscr G$, $H$ is in the filter if and only if there exists a finite $E\subseteq\omega$, such that whenever $\pi\in\mathscr G$ for which $\forall n\in E$, $\pi_n=\operatorname{id}$, then $\pi\in H$. (For example taking $E=\varnothing$ we have that $\{\pi\in\mathscr G\mid\forall n\in\varnothing(\pi_n=\operatorname{id})\}=\mathscr G$ itself.)
Some easy propositions:
- Each $A_n$ is symmetric, and each $\leq_n$ is symmetric.
- The enumerated partition $\{A_n\mid n\in\omega\}$ is symmetric, and the enumeration of the orders is also symmetric.
And the important point: There is no choice function from the $A_n$'s.
Sketch for a proof: If $f$ was such a choice function, it would have a finite support $E$ as above, now taking any $k\notin E$ we can apply any $\pi$ which fixes $f$ but $\pi_k\neq\operatorname{id}$ to get a contradiction.
(This is the usual argument.)
Now we can use the Jech-Sochor theorem. Or we could have used forcing to begin with, it would just make things harder to write down properly in this case.