It is not that one feels the need to "get rid of" sequences. You are certainly right that sequences are useful, for the simple reason that many, many topological spaces are metric spaces, and sequences can be used to detect closure of subsets of a metric space. Sequences remain useful even to topologists at the current boundary of research.
Nonetheless, there do exist topological spaces that are not metric, and for which sequences are not sufficient to detect closure. These topological spaces arise naturally, and it is necessary to understand them for many applications. So one needs to develop a theory to understand them. Hence the development of separation axioms and associated topics of point set topology. Then, of course, those topics become intellectually interesting in and of themselves, hence the further growth of point set topology.
Here is an example, an extremely non-Hausdorff quotient space of the torus $S^1 \times S^1$. Consider the flow $t \cdot (z,w) = (e^t z, e^{\sqrt{2}t}w)$, defined for $t \in \mathbb{R}$. Two points $(z,w)$, $(z',w')$ are on the same "flow line" if there exists $t$ such that $t \cdot (z,w) = (z',w')$. This is an equivalence relation, and so flow lines form a decomposition of the torus. Each flow line is the injective image of a line of slope $\sqrt{2}$ in the universal cover $\mathbb{R} \times \mathbb{R}$. Every flow line is dense in $S^1 \times S^1$. Therefore in the quotient space of $S^1 \times S^1$---the one that is defined using the decomposition into flow lines---every point is dense. Sequences are quite useless for exploring the topology of the quotient.