As Daniel mentioned in comments, there is an intimate relation between flows, integral curves and vector fields (a collection of arrows at every point of the sphere). Given a flow, one can follow individual points to create curves on the surface which fall into distinct orbits in this case. Given a family of such curves, one can differentiate them to obtain the vector field.
Now, the Hairy ball theorem only concerns the vector fields and says that the sum of degrees of zeroes of any field is $2$ but thanks to the above connection this also applies to flows. In particular, a vector field has a zero precisely when the associated flow has a fixed point.
We still need to connect flows with Mobius transformations though. For example, a rotation by $90$ degrees around certain axis is a transformation that replaces a sphere with its rotated double but a flow is an actual animation of this rotation. It's possible to pass from one to the other the same way movie-makers do. Rotate the sphere by $1$ degree, take a picture, rotate by another degree, take a picture again, etc. At the end you will have stop motion film recording the rotation. By making the steps infinitesimal you'll obtain the flow. Still, for the fixed points this distinction doesn't matter because they don't move at all, so we are at the end of the road: the fixed points of the Mobius transformations are precisely the zeroes of the corresponding vector fields.
Note that the Hairy ball theorem also tells us that there must be precisely two fixed points (at least when the degrees of the zeroes are positive, as they are here), counted with multiplicity.