We assume it has already been shown that $X$ has a denumerable subset $D$. Then there is a bijection $\beta$ from $\mathbb{N}$ to $D$. (For definiteness, $\mathbb{N}$ starts at $0$.)
Write $d_i$ instead of $\beta(i)$. Let $Y$ be the set of $d_i$ such that $i$ is even.
We define a mapping $\varphi$ from $X$ to $X\setminus Y$ as follows:
(1) If $x=d_i$ for some $i$, let $\varphi(x)=d_{2i+1}$;
(ii) If $x\not\in D$. let $\varphi(x)=x$.
It is not difficult to verify that $\varphi$ is a bijection from $X$ to $X\setminus Y$.
Remark: One can modify the argument to show that if $Y$ is a given denumerable subset of $X$, then there is a bijection from $X$ to $X\setminus Y$.
The idea is that we choose a denumerable subset $D$ of $X\setminus Y$. Let $D_0$ be the even index members of $D$, and $D_1$ the odd index members. Send $X\setminus Y$ to $(X\setminus Y)\setminus D_0$ as in the answer above. That makes room to send $Y$ to $D_0$.