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I know that we can find two subgroups of $\mathfrak{S}_6$ both isomorphic to $\mathfrak{S}_5$ that are however not conjugate (here) in $\mathfrak{S}_6$. These subgroups are not conjugate precisely because one and only one of them is transitive.

Can we find two transitive subgroups of a symetric group that are isomorphic but not conjugate ?

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You are looking for a group with two core-free subgroups of the same order that are not equivalent under an automorphism of the group.

For example, we could take the subgroups $\langle (1,2) \rangle$ and $\langle (1,2)(3,4) \rangle$ of $S_4$. The actions on the cosets of these subgroups give rise to two transitive subgroups of $S_{12}$ that are isomorphic to $S_4$, but not conjugate in $S_{12}$.

Or, we could take the subgroups $\langle (1,2,3,4) \rangle$, $\langle (1,2),(3,4) \rangle$ of $S_4$ to get an example in $S_6$.

Derek Holt
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