I'm trying to count both the total number of 3-manifolds that can be generated in this way and how many are unique 3-manifolds.
There are 4 options for identifying opposite faces: straight across, through the center of the cube, and two reflections (vertical and horizontal). Therefore there are 64 total possible identifications.
To be a 3-manifold each point needs a ball neighborhood. For this I think it is enough that all 8 vertices are identified. I tried counting how many of the 64 lead to a connected graph of the vertexes and got 38. Then out of these 38 I checked how many lead to an isomorphic graph and got 7.
My question is: Does this method work/is there an easier combinatorial way to do this? (I thought there should be 6 unique ones although I cannot find a reference for this)