I am currently reading Lectures in Logic and Set Theory: Volume 2, Set Theory by Tourlakis. In the book, he formally introduces the power set notation, $\mathcal{P}(A)$, as well as union, $\bigcup A$, into the formal, first-order theory of sets as unary function symbols by extending the theory through definition. This process is described in the linked Wikipedia article and also here but, in summary, to introduce a function symbol into our theory, we must first find a defining formula for the function, \begin{equation}\forall x_1\ldots\forall x_n\phi(f(x_1,\ldots, x_n), x_1,\ldots x_n),\tag{Defining Axiom}\end{equation}
where $\phi(y,x_1,\ldots,x_n)$ is a first-order formula with free variables $y,x_1,\ldots,x_n$, then take this defining axiom and add it to our formal theory as a non-logical axiom. However, this is provided that we first have a proof of the existence and uniqueness of such an object for every possible term: $$\forall x_1\ldots\forall x_n\exists ! y\phi(y,x_1,\ldots x_n)\tag{Existential Formula}.$$
My question is how is this done for the intersection symbol, $\bigcap$? Tourlakis avoids the issue since $\bigcap\varnothing$ is not a set and thus "violates" the existential formula. Specifically, he writes, "We do not feel inclined to perform acrobatics just to get around the fact that $\bigcap\varnothing$ cannot be a formal term: it is not a set." I would like to know how this issue is resolved and, if the "acrobatics" required to get around this issue is too extreme, how I can be assured that leaving this as a loose end will not cause too many issues in the theory.