$|G|=36=2^2·3^2$.
For the number of Sylow 3-subgroups of $G$ we have: $n_3≡1\ (mod \ 3)$ and $n_3 \ | \ 2^2=4$. Suppose $G$ has no normal Sylow 3-subgroup. Then $n_3=4$. Our goal is to show that $G$ has a normal Sylow 2-subgroup.
Let $P∈Syl_3 (G)$. We have $n_3=|G∶N_G (P)|=4$. Let $G$ act on the set of distinct left cosets of $N_G (P)$ by left multiplication. This action affords a homomorphism $φ:G→S_4$ and, denoting $ker \ φ=K$, by the 1st Isomorphism Theorem we have: $G/K≅L≤S_4$. Then by the Lagrange’s Theorem, $|G/K| \ | \ |S_4 |=24$. Since $K≤N_G (P)$ and $|N_G (P)|=(2^2·3^2)⁄4=9$, the Lagrange’s Theorem enforces the following possible orders of $K$: $1,3,9$. There cannot be $|K|=1$ since then $|36/1|=36∤24=|S_4 |$. There cannot be $|K|=9$, since then there would be $K∈Syl_3 (G)$ and because $K⊲G$, $G$ would have a normal (hence unique) Sylow 3-subgroup, what contradicts our assumption. So it can only be that $|K|=3$. Then $|G/K|=36/3=12$. Since $G/K≅L≤S_4$ and $S_4$ has only one subgroup $L$ of order $12$, which is $A_4$, it follows that $G/K≅A_4$. In its turn, $A_4$ has one unique subgroup of order $4$, which is isomorphic to $V_4$ (Klein Viergruppe). Hence $G/K$ has one unique subgroup of order $4$, isomorphic to $V_4$, that because of order considerations (i.e., $|G/K|=12=2^2·3$ and $|V_4 |=4=2^2$) is a Sylow 2-subgroup of $G/K$.
Let $Q∈Syl_2 (G)$. Because $|K|=3$, $|Q|=2^2=4$, by the Lagrange’s Theorem $K ⋂ Q=1$, hence the image $Q/K=QK/K$ is of order $|QK/K|=(|Q||K|/|K ⋂ Q|)⁄|K| =|Q||K|⁄|K| =|Q|$ and so there is a bijection $Q→QK/K$ given as $q→qK$. Because of this we have $Q≅QK/K≅V_4$ (recall that $V_4$ is a unique subgroup of $G/K$ of order 4). Since $V_4⊲A_4$, it follows that $QK/K⊲G/K$ and so by the Correspondence Theorem $QK⊲G$.
Note that since $K⊲G$ and $K ⋂ Q=1$, the subgroup $QK=KQ$ can be written as a semidirect product $KQ≅K⋊Q$. And we already know the isomorphism types of $K≅Z_3$ and $Q≅V_4≅Z_2×Z_2$, therefore, $KQ≅Z_3⋊(Z_2×Z_2 )$.
Since $G/K≅A_4$, the part of the subgroup lattice of $G$ which contains $K$ reflects the subgroup lattice of $A_4$ by the Lattice Isomorphism Theorem. $A_4$ and hence $G/K$ contains four cyclic subgroups of order $3$ isomorphic to $Z_3$ (in $A_4$ these are the subgroups generated by $3$-cycles). Let's denote them as $P_1/K,P_2/K,P_3/K,P_4/K$. Their preimages in $G$ (each of which obviously contains $K$) are of order $9=|K|·|Z_3 |=3^2$ each, hence these preimages must be exactly the four Sylow 3-subgroups of $G$, that is, $P_1,P_2,P_3,P_4∈Syl_3 (G)$. So we have that $K$ lies in the intersection of all four Sylow 3-subgroups of $G$. Since $K$ is abelian, $K≤C_G (K)$.
Furthermore, since $|P_i |=3^2$, the Sylow 3-subgroups of $G$ are abelian, hence each of them centralizes its subgroup $K$, that is, $P_1,P_2,P_3,P_4≤C_G (K)$. But only $G$ itself contains $K$ and $P_1,P_2,P_3,P_4$ together (recall that the part of the subgroup lattice of $G$ containing $K$ reflects the subgroup lattice of $A_4$). Thus, $C_G (K)=G$ and hence $K≤Z(G)$.
But this means that all elements of $K$ commute with all elements of $Q$ and hence the semidirect product $QK=KQ≅K⋊Q$ is just a direct product, i.e. $K⋊Q=K×Q$. Thus $QK≅K×Q$, therefore $Q⊲QK$. Since $Q∈Syl_2 (QK)$, this means that $Q \ char \ QK$. Because $QK⊲G$ as was shown before, $Q \ char \ QK⊲G$, therefore $Q⊲G$. Since $Q∈Syl_2 (G)$, this means that $G$ has a normal Sylow 2-subgroup $Q≅V_4≅Z_2×Z_2$.
So, a group $G$ of order $36$ with no normal Sylow 3-subgroup always has a normal Sylow 2-subgroup. There doesn’t exist a group of order $36$ with no normal Sylow 3-subgroup and no normal Sylow 2-subgroup at the same time. And there exists a group $G$ of order 36 with a normal Sylow 3-subgroup, for example, the cyclic group $Z_{36}$ (this group also has a normal Sylow 2-subgroup at the same time).
⦁ Thus, a group $G$ of order $36$ has either a normal Sylow 2-subgroup or a normal Sylow 3-subgroup.