In general, numerical methods don't constitute proofs. If all we have is an unknown blackbox function $f:\mathbb{R} \to \mathbb{R}$ that we know nothing about, and all we can do is compute its value at (finitely) many points, then we simply can't prove that $f$ is positive.
However, in specific cases, we could have arguments based on numerical methods that are valid. Typically, we'd need to make a numerical approximation, and then prove, using non-numerical methods, that our numerical approximation is accurate enough for the theorem to follow. As such, how numerical methods can aid us in proving a statement is very statement-specific.
Take, for example the following problem: Prove that $f(x) = x^2 + 1 > 0 \ \forall x \in [-1, 1]$.
Invalid proof: We computed $f(x)$ at $10^{10^{10000}}$ random points and used linear interpolation between them. Here's a plot. We can see that $f(x)$ is always positive.
Valid proof 1: We computed $f(x)$ at points three points: $f(-1) = 2$, $f(0) = 1$, and $f(1)=2$. Let $g(x)$ be the linear interpolation of the points $(-1, 2)$, $(0, 1)$, and $(1, 2)$. $g$ attains its minimum at $g(0) = 1$. Since $f^{\prime \prime} = 2$, we can compute an error bound on our interpolation (see https://ccrma.stanford.edu/~jos/resample/Linear_Interpolation_Error_Bound.html): $|f(x) - g(x)| \leq \frac{2}{8}$. Therefore, we can conclude that $f(x) \geq \frac{3}{4} > 0$.
Note: Often, if we need to resort to numerical methods, if would be just as hard to compute derivatives. However, we don't need the actual derivatives, we just need an upper bound. The better the bound, the less points we would need to evaluate $f(x)$ at. Furthermore, bound to the first derivative is enough, but having second could also reduce the number of points needed.
Valid proof 2 (sketch): We know that $f(x)$ is convex. We use a numerical method to compute its minimum. find that $\min f(x) \approx 1.0000000075$. We also have an (true, non-numerical) error bound on our approximation: $|1.0000000075 - \min f(x)| < 0.001$. Therefore, $f(x) > 1.0000000075 - 0.001 > 0$.
Finally, it doesn't really matter whether analytical proofs exist or not. The validity of any proof is only determined by that proof and no others.
In fact, it has been proven that not all true statements can be proven. But that is no reason to reduce our standards of rigor.