It is not entirely clear from the wording of the question whether this is what was intended, but I will read the question like this:
Let $X$ be a set. Is there a topology $\tau$ on $\newcommand{\powerset}[1]{\mathcal P(#1)}\powerset{X}$ such that for any non-increasing sequence of sets
$s_1 \supseteq s_2 \supseteq \dots \supseteq s_n \supseteq s_{n+1} \supseteq\ \dots$ we have
$$s=\bigcap_{i=1}^n s_i\qquad\text{if and only if}\qquad \lim_{i\to\infty} s_i=s,$$
i.e. $s$ is the intersection of this system if and only if the sequence $(s_i)$ converges to $s$ in the topology $(\powerset X,\tau)$?
In fact, we can take a very simple topology which fulfills this. There is natural bijection between $\powerset X$ and $\{0,1\}^X$ given by mapping $A\mapsto \chi_A$, i.e., every set is mapped to its characteristic function.
The we simply take discrete topology on $\{0,1\}$ and we endow $\{0,1\}^X$ with product topology. We get the space which is usually called Cantor cube.
In product topology, convergence is precisely pointwise convergence. So what is convergence in our topology? When a sequence $A_i$ of subsets of $X$ converges to $A$? This is equivalent to
$$(\forall x\in X)\lim_{i\to\infty}\chi_{A_i}(x)=\chi_A(x),$$
where the convergence of $\chi_{A_i}(x)$ to $\chi_A(x)$ is convergence in the discrete space $\{0,1\}^X$.
In the other words, $\lim\limits_{i\to\infty} A_i=A$ iff for every $x\in X$:
- If $x\notin A$, then there is $i_0$ such that $x\notin A$ for $i\ge i_0$.
- If $x\in A$, then there is $i_0$ such that $x\in A$ for $i\ge i_0$.
Claim. If we take Cantor space topology on $\powerset X$, then for any non-increasing sequence of sets
$s_1 \supseteq s_2 \supseteq \dots \supseteq s_n \supseteq s_{n+1} \supseteq \dots$ the equivalence
$$s=\bigcap_{i=1}^n s_i\qquad\Leftrightarrow\qquad \lim_{i\to\infty} s_i=s$$
holds.
$\boxed{\Rightarrow}$ Let $s=\bigcap\limits_{i=1}^n s_i$. If $x\in s$, then clearly $x\in s_i$ for each $i$. If $x\notin s$, then there is and $i_0$ such that $x\notin s_{i_0}$. And since the sequence is non-increasing, we have $x\in s_i$ for each $i\ge i_0$.
$\boxed{\Leftarrow}$ Let $s_i\to s$. If $x\in s$, then $x\in s_i$ for every large enough $i$. But since the system is non-increasing, we get $s\in s_i$ for each $i$. This means that $$s\subseteq \bigcap\limits_{i=1}^n s_i.$$
We can show the opposite inclusion by a similar argument. (Or we can simply rephrase the above argument to get equivalences instead of implications.)
While the Cantor topology on $\powerset X$ is useful in many contexts and it is often used, when I read the first part of your question, it seemed to me that this might be closer to limit superior and limit inferior of sets. (For the second part, the choice of the topology would probably depend on the nature of the function $F$.)
You can read more about limit superior and limit inferior of sequence of sets in this Wikipedia article. Clearly, if they coincide, we can talk about limit. Similar convergence for for closed (or compact) subsets of a topological space is known as Kuratowski convergence.
If this seems like something which would be interesting you, you can find some other questions on this site about this type of convergence (and about limit superior/inferior of sets). You could find such questions, for example, in the limsup-and-liminf. To find the ones which are about this type of extreme limits, perhaps you could add general-topology tag or
elementary-set-theory tag.
For example, you can find this question which is somewhat similar to yours: Do limits of sequences of sets come from a topology? (And the answer given there is Cantor cube.)