Here is a proof with Natural Deduction; for the rules, see e.g.;
1) $¬∀x(Px → Qx)$ --- premise
2) $¬∃x¬ (¬Qx → ¬Px)$ --- assumed [a]
3) $¬(¬Qx → ¬Px)$ --- assumed [b]
4) $∃x¬ (¬Qx → ¬Px)$ --- from 3) by $∃$-intro
5) $\bot$ --- from 2) and 4) by $\lnot$-elim
6) $¬Qx → ¬Px$ --- from 3) and 5) by Double Negation-elim, discharging [b]
7) $Px → Qx$ --- from 6) by Contraposition [it is easily proved with a sub-derivation]
8) $∀x(Px → Qx)$ --- from 7) by $∀$-intro : no open assumptions with $x$ free
9) $\bot$ --- from 1) and 8)
10) $∃x¬ (¬Qx → ¬Px)$ --- from 2) and 9) by Double Negation, discharging [a].
Thus, from 1) and 10) we have :
$¬∀x(Px → Qx) \vdash ∃x¬ (¬Qx → ¬Px)$.
The end result would be ¬(¬Q → ¬P) Which means that the implication must be reversed, which is easily done using the contrapositive law, but if the outer negation is in the way, I can't do that, yet...
– Zen Jan 22 '16 at 12:39Edit: To clarify, what you mentioned is correct, however I would need to somehow include the negation in that, to mantain formal proofing. I have no idea how I would go on about doing this but that's what being asked
– Zen Jan 22 '16 at 13:16