There are open sets in the lower limit topology that are not of the form $[a,b)$: the lower limit topology consists of the subsets of $\Bbb R$ that are unions of sets of the form $[a,b)$, so, for instance, every set of the form $(a,b)$ is open in the lower limit topology:
$$(a,b)=\bigcup_{a<x<b}[x,b)\;.$$
Let $\tau$ be the lower limit topology on $\Bbb R$; there are several ways to see that $|\tau|\le\mathfrak{c}$. One is to observe that $\langle\Bbb R,\tau\rangle$ is hereditarily Lindelöf. Now let $U\in\tau$, and let $\mathscr{U}=\{[a,b):[a,b)\subseteq U\}$; clearly $\mathscr{U}$ is an open cover of $U$, so it has a countable subcover $\mathscr{U}_0$. Thus, every open set in the lower limit topology is the union of countably many sets of the form $[a,b)$. There are $\mathfrak{c}$ such sets, so there are $\mathfrak{c}^{\aleph_0}=(2^{\aleph_0})^{\aleph_0}=2^{\aleph_0\cdot\aleph_0}=2^{\aleph_0}=\mathfrak{c}$ countable families of them and hence at most $\mathfrak{c}$ members of $\tau$.