It looks like you learned a lot with your Master thesis, not about a topic itself but about how to tackle a topic.
Even more, you have one aspect that you can directly tackle and that you should focus:
bad result was due to [...] my poor organization
You have a very strong selling point: you can show that you have an idea about the path to a better Master thesis, maybe you learned it the hard way, but it is still a learned lesson [1].
Now, the thesis in itself is not that important (as long as it does not have a strikingly bad grade, if it is graded), but sooner or later you will have to present it as part of a PhD interview. How do you present it?
Show that you learned your lesson, not by saying "I had poor organization, so thesis is crap", but by having a well organized presentation (or poster).
You will soon learn that in life the "how" you did something generally has a much larger impact than the "what" you did ... because how you do things dictates what you can potentially achieve, all conditions being optimal [2].
The fact that you did not discover anything new would be just a nice side aspect of the thesis, of course you will win no Fields'medal with your thesis.
But.
An excellent thesis shows that the student mastered the path to the results and obtained worthwhile results, a horrible thesis shows that the student didn't master the path but obtained interesting results, an average thesis shows that the student have an idea about how to get to some results and has an idea about how the results could be improved.
On average in a given year, there are more PhD positions available than excellent thesis prodcuced: good luck!
[1] Try to look deep into your aspect of "failure", the poor organization: are you poorly organized because you had some thought about the path to tackle the topic, but you still tried mostly to follow the path shown by your advisor and the literature you were given by the advisor (exogen disorganization) or was it your side (endogen disorganization)?
[2] don't think in purely rationalistic terms. For example, How does not mean that you should be as efficient as a computer/robot. Optimal conditions refers to your capacity of expressing your potential, maybe someone needs to sleep during the day and work at night and living isolated in a cave, to achieve his/hers potential, while someone else may need continuous discussion with peers and structured working days 8-5, Monday to Friday ...