As the title says, my question is about how to define the connection laplacian on general vector bundles.
I think I understand how to define the connection laplacian on the tensorbundles:
Let $M$ be a Riemannian manifold and $\mathcal{T}^k_l(M)$ be the space of smooth section of the vector bundle of $(k,l)$-tensors on $M$. Call elements in $\mathcal{T}^k_l(M)$ smooth $(k,l)$-tensor fields.
We think of a smooth $(k,l)$-tensor field as a $C^{\infty}(M)$-multilinear map
$F\colon \Omega^1(M)\times\ldots\times\Omega^1(M)\times\mathfrak{X}(M)\times\ldots\times\mathfrak{X}(M)\rightarrow C^\infty(M)$,
where $\Omega^1(M)$ is the space of $1$-forms on $M$, $\mathfrak{X}(M)$ is the space of vector fields on $M$, $\Omega^1(M)$ is taken $l$-times and $\mathfrak{X}(M)$ is taken $k$-times.
For each $k,l$ he Levi-Civita-Connection on $M$ induces a connection $\nabla$ on the bundle of $(k,l)$-tensors, so we have maps
$\nabla\colon \mathcal{T}^k_l(M)\rightarrow \mathcal{T}^{k+1}_l(M)$ given by $\nabla F(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k,X):=(\nabla_XF)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k)$
It turns out that $(\nabla^2F)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k,Y,X):=(\nabla\nabla F)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k,Y,X)=(\nabla_X\nabla_YF-\nabla_{\nabla_XY}F)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k)$
Finally we define the connection laplacian $\Delta\colon \mathcal{T}^k_l(M)\rightarrow \mathcal{T}^k_l(M)$ by $(\Delta F)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k):=tr_g((Y,X)\mapsto\nabla^2F(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k,Y,X))$ where $tr_g$ is to be understood as follows: if $G$ is a $(2,0)$-tensor, we transform it into a $(1,1)$-tensor by via the metric (i.e. by applying the #-operator). A $(1,1)$ tensor can be understood as an endomorphism of $T_pM$ of which the trace can be taken.
If $(e_i)$ is a local orthonormal frame, we have $(\Delta F)(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k)=\sum_i \nabla^2F(\omega^1,\ldots,\omega^l,Y_1,\ldots,Y_k, e_i,e_i)$.
Now, let $E$ be a vector bundle over $M$ with a connection $\nabla$. For any smooth section $\varphi$ of $E$, we define
$\nabla^2\varphi (X,Y):=\nabla_X\nabla_Y\varphi - \nabla_{\nabla_XY}\varphi$ where $X$ and $Y$ are vector fields. For a local orthonormal frame $(e_i)$ we set
$\Delta \varphi :=\sum_i\nabla^2\varphi (e_i,e_i)$.
However, this definition is unsatisfying for me:
Question 1: Is it possible to define a "trace" in the setting of general vector bundles $E$ so that $\Delta \varphi$ turns out to be trace($\nabla^2\varphi$) just as in the case of the tensor bundles? Edit: I found a reference that defines the connection laplace via trace (Lawson, Spin Geometry, p. 154). Could someone explain to me how the trace is to be understood in that context?
Question 2: Is there more behind the definition of $\nabla^2\varphi (X,Y)$ (as in the case of the tensor bundles, where $\nabla^2 F$ is $\nabla\nabla F$)? That is, do $\nabla$ and the Levi-Civita-Connection induce a connection $\nabla$ on $T^*M\otimes E$ in a way that $\nabla\nabla\varphi=\nabla^2\varphi$?
I also would appreciate any kind of reference where this is explained.